Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs199505209 chr9:97222889 GCCC/G 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs199572525 chr4:70272608 A/C 7.08E-13 117 41.22 42.3 6 KM Plot
THYM rs1997036 chr2:30689373 C/G 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs1997037 chr2:30689462 C/T 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs199706214 chr10:110986651 A/G 0.000205 114 28.43 32.7 46.07 KM Plot
THYM rs199804555 chr4:70061765 C/CAAA 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs199898120 chr19:49237748 T/TC 2.36E-6 114 11.58 53.27 38.13 KM Plot
THYM rs199910097 chr10:1548332 C/CT 0.000159 118 40.67 44.38 25.83 KM Plot
THYM rs199916367 chr12:114110573 T/TTG 0.00014 119 48 34.87 15.05 KM Plot
THYM rs199958579 chr9:97199547 C/G 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs200107628 chr4:70075302 AC/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs200151460 chr9:97095831 C/T 8.53E-5 118 41.77 42.73 17.03 KM Plot
THYM rs200172787 chr9:97232695 T/G 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs200262694 chr9:97119980 G/A 8.87E-5 118 41.77 45.87 17.03 KM Plot
THYM rs200337786 chr9:97106406 C/CA 0.000101 116 41.22 44.3 17.03 KM Plot